Symposium:

Part of the school will be a Mini-Symposium on Multiscale Methods and Modelling in Biophysics and Systems Biology. Please contact the organizers if you wish to participate in the symposium. Talks and posters from participants of the school and as well as contributions form non-participants are welcome.

Friday, May 22
Time Topic Room
  All talks will be held in Medicine and Life Sciences Building, Bioinformatics Laboratory, 11th floor, Room 1101
8:30-8:50 Manfred Bohn: The 3D Sturcture of Chromatin Session Chair:
Dieter Heermann
8:50-9:10 Tomasz Berezniak: Multiscale modelling of the Diels-Alder ribozyme by means of computational molecular biophysics methods  
9:10-9:30 Bernhard Kausler: Computational Mass Spectrometry-based Proteomics  
9:30-9:50 Jie Liang: Computational characterization of structure, function, evolution, and dynamics of proteins and molecular networks  
  Coffee break Posters will be shown during the coffee break
10:30-10:50 Bingding Huang: Improving protein binding site prediction with consensus approaches Session Chair:
Chaochun Wei
10:50-11:10 Mai Zahran: How EcoRV recognises the cognate sequence  
11:10-11:30 Xiaotu Ma: The statistical significance of spatially restricted expression of genes from in situ hybridization data  
  Lunch break  
14:00-14:20 Ping Ao: It seems that there are some interest on the fundational theory of biology: evolution Session Chair:
Lu Xie
14:20-14:40 Wei Lin: Adaptive synchronization technique in parameters identification and memory association  
14:40-15:00 Xuejuan Zhang: A Computational Study on Learning Facilitated Theta-nested Gamma in Object Discrimination  
  Coffee break Posters will be shown during the coffee break
15:00-15:20 Yixue Li: Modeling genome-wide human regulatory network initiated by TFs and miRNAs through forward and reverse engineering Session Chair:
Ping Ao
15:20-15:40 Lei Liu: Gene Expression Module based Chemical Similarity Search
15:40-16:00 Sun Jing: SEPPA: a computational server for  Spatial Epitope Prediction of Protein Antigens
 

Poster Contributions:

  • Na Yu: Stochastic Phase Dynamics and Coherence Resoance
  • Elena Algaer, Hossein Ali Karimi-Varzaneh, and Florian Müller-Plathe: Self-assembling of DPPC lipid membrane by means of coarse-graining simulation (Poster)
  • Manfred Bohn: Chromatin Organization
  • Julian Weichsel, Nikolas Herold, Maik Lehmann, Hans-Georg Kräusslich, Ulrich S. Schwarz: Understanding the effect of virus infection on cellular architecture
    Hossein Ali Karimi-Varzaneh: Self-assembling of DPPC lipid membrane by means of coarse-graining simulation
  • Yingzi Yang: Cooperation of sinusoidal beating organisms: Synchronization, attraction and aggregation through hydrodynamic interactions
  • Shuangwei Hu: tba
  • Sun Jing: SEPPA: a computational server for  Spatial Epitope Prediction of Protein Antigens
  • D. Kokh, B. Huang, R. Wade, P. Winn: Modeling protein adsorption on the Gold surface: Brownian Dynamic simulations