Confirmed Speakers:

Prof. Jie Liang
Department of Bioengineering
University of Illinois at Chicago
and
Institute for Systems Biomedicine
Shanghai Jiaotong University
and
Shanghai Center for Bioinformation Technology

Prof. Ping Ao
Institute for Systems Biomedicine
Shanghai Jiaotong University
and
Shanghai Center for Bioinformation Technology

Prof. Luonan Chen
Institute of Systems Biology
Shanghai University
and
Shanghai Center for Bioinformation Technology

Prof. Xinguang Zhu
CAS-MPG Partner Institute for Computational Biology
Shanghai Institute for Biological Sciences
Chinese Academy of Sciences

Prof. Li Yixue
The Key Laboratory of Systems Biology
Shanghai Institute for Biological Sciences
Chinese Academy of Sciences
and Shanghai Center for Bioinformation Technology

Prof. Liu Lei
The Key Laboratory of Systems Biology
Shanghai Institute for Biological Sciences
Chinese Academy of Sciences
and Shanghai Center for Bioinformation Technology

Prof. Bo Yuan
Department of Computer Science and Engineering
Shanghai Jiaotong University

Prof. Dieter W. Heermann
Institute for Theoretical Physics
University of Heidelberg
and
Member of the Interdisciplinary Center
for Scientific Computing
University of Heidelberg
and
Adjunct Professor and
Member of the Institute for Molecular Biophysics
The Jackson Laboratory
Maine, USA

Prof. Jörg Langowski
German Cancer Research Center
Heidelberg

Prof. G. Bock
Institute for Mathematics and
Member of the Interdisciplinary Center
for Scientific Computing
University of Heidelberg

Dr. S. Koerkel
Member of the Interdisciplinary Center
for Scientific Computing
University of Heidelberg

Dr. Frauke Gräter
CAS-MPG Partner Institute for Computational Biology
Shanghai Institutes for Biological Sciences
Chinese Academy of Sciences
and
Bioquant, Heidelberg University

Program:

Monday, May 18
Time Topic Room
  Registration Medicine and Life Sciences Building, Bioinformatics Laboratory, 13th floor, room 1304
  Coffee break  
10:45-12:15 Heermann: Monte Carlo Methods I  
  Lunch break  
14:00-15:30 Langoswki: Polymer Models for the Genome I  
  Welcome Reception  
Tuesday, May 19
Time Topic Room
8:30-10:00 Heermann: Monte Carlo Methods II  
  Coffee break  
10:30-12:00 Langowski: Polymer Models for the Genome II  
  Lunch break  
14:00-15:30 Edwards/Stacklies: Deciphering protein function: Molecular dynamics simulations  
15:45-17:15 Practical  
Wednesday, May 20
Time Topic Room
8:30-10:00 Xinguang Zhu: Metabolism Modeling I  
  Coffee break  
10:30-12:00 Xinguang Zhu: Metabolism Modeling II  
  Lunch break  
  Excursion  
     
Thursday, May 21
Time Topic Room
8:30-10:00 Jie Liang: Geometric structure, folding, and biological functions of proteins from Markov chain Monte Carlo and Sequential Monte Carlo I  
  Coffee break  
10:30-12:00 Jie Liang: Geometric structure, folding, and biological functions of proteins from Markov chain Monte Carlo and Sequential Monte Carlo II  
  Lunch break  
14:00-15:30 Langowski: Polymer Models for the Genome III  
  Banquet  
Friday, May 22
Time Topic Room
  All talks will be held in Medicine and Life Sciences Building, Bioinformatics Laboratory, 11th floor, Room 1101
8:30-8:50 Manfred Bohn: The 3D Sturcture of Chromatin Session Chair:
Dieter Heermann
8:50-9:10 Tomasz Berezniak: Multiscale modelling of the Diels-Alder ribozyme by means of computational molecular biophysics methods  
9:10-9:30 Bernhard Kausler: Computational Mass Spectrometry-based Proteomics  
9:30-9:50 Jie Liang: Computational characterization of structure, function, evolution, and dynamics of proteins and molecular networks  
  Coffee break Posters will be shown during the coffee break
10:30-10:50 Bingding Huang: Improving protein binding site prediction with consensus approaches Session Chair:
Chaochun Wei
10:50-11:10 Mai Zahran: How EcoRV recognises the cognate sequence  
11:10-11:30 Xiaotu Ma: The statistical significance of spatially restricted expression of genes from in situ hybridization data  
  Lunch break  
14:00-14:20 Ping Ao: It seems that there are some interest on the fundational theory of biology: evolution Session Chair:
Lu Xie
14:20-14:40 Wei Lin: Adaptive synchronization technique in parameters identification and memory association  
14:40-15:00 Xuejuan Zhang: A Computational Study on Learning Facilitated Theta-nested Gamma in Object Discrimination  
  Coffee break Posters will be shown during the coffee break
15:00-15:20 Yixue Li: Modeling genome-wide human regulatory network initiated by TFs and miRNAs through forward and reverse engineering Session Chair:
Ping Ao
15:20-15:40 Lei Liu: Gene Expression Module based Chemical Similarity Search
15:40-16:00 Sun Jing: SEPPA: a computational server for  Spatial Epitope Prediction of Protein Antigens
 

Poster Contributions:

  • Na Yu: Stochastic Phase Dynamics and Coherence Resoance
  • Elena Algaer, Hossein Ali Karimi-Varzaneh, and Florian Müller-Plathe: Self-assembling of DPPC lipid membrane by means of coarse-graining simulation (Poster)
  • Manfred Bohn: Chromatin Organization
  • Julian Weichsel, Nikolas Herold, Maik Lehmann, Hans-Georg Kräusslich, Ulrich S. Schwarz: Understanding the effect of virus infection on cellular architecture
    Hossein Ali Karimi-Varzaneh: Self-assembling of DPPC lipid membrane by means of coarse-graining simulation
  • Yingzi Yang: Cooperation of sinusoidal beating organisms: Synchronization, attraction and aggregation through hydrodynamic interactions
  • Shuangwei Hu: tba
  • Sun Jing: SEPPA: a computational server for  Spatial Epitope Prediction of Protein Antigens
  • D. Kokh, B. Huang, R. Wade, P. Winn: Modeling protein adsorption on the Gold surface: Brownian Dynamic simulations
  
Monday, May 25
Time Topic Room
8:30-10:00 Heermann: Monte Carlo Methods III  
  Coffee break  
10:30-12:00 Jin Zhao: Topology and functions in metabolic network I  
  Lunch break  
14:00-15:30 Tutorial  
  Practical  
Tuesday, May 26
Time Topic Room
8:30-10:00 Luonan Chen: Network Systems Biology  
  Coffee break  
10:30-12:00 Luonan Chen: Modeling Biomolecular Networks - Structures and Dynamics  
  Lunch break  
14:00-15:30 Jin Zhao: Topology and functions in metabolic network II  
15:45-17:15 Practical  
Wednesday, May 27
Time Topic Room
8:30-10:00 Ping Ao: Global and hierarchical view of bionetwork dynamics: adaptive landscape  
  Coffee break  
10:30-12:00 Tutorial  
  Lunch break  
  Excursion  
     
Thursday, May 28
Time Topic Room
8:30-10:00 Stefan Koerkel: Optimal Experimental Design I  
  Coffee break  
10:30-12:00 Stefan Koerkel: Optimal Experimental Design II  
  Lunch break  
14:00-15:30 Yuan Bo: To decipher the building blocks of gene regulatory networks I  
15:45-17:15 Yuan Bo: To decipher the building blocks of gene regulatory networks II  
Friday, May 29
Time Topic Room
8:30-10:00 Jiarui Wu: Introduction to Systems Biology  
  Coffee break  
10:30-12:00 Guoping Zhao: Introduction to Synthetic Biology  
  Lunch break  
  Farewell party